About ProteomeScout

ProteomeScout is a resource for exploring proteins and post-translational modifications. This minimal build keeps the flat-file protein viewer and KSTAR plotting workflows available without the legacy database-backed stack.

Included tools

Protein Search: search the TSV-backed protein dataset and open the interactive viewer.

KSTAR Plotting: upload activities and FPR tables to render kinase activity plots.

KSTAR Galaxy: launch the Galaxy-hosted KSTAR calculate workflow.

ProteomeScoutAPI: API client code and usage examples.

Viewer Documentation: feature notes and usage guidance for the protein viewer.

How to Cite

ProteomeScout: Matlock MK, Holehouse AS, Naegle KM. ProteomeScout: a repository and analysis resource for post-translational modifications and proteins. Nucleic Acids Res. 2015;43(Database issue):D521-D530. doi: 10.1093/nar/gku1154. PubMed
ProteomeScoutAPI: Holehouse AS, Naegle KM. Reproducible Analysis of Post-Translational Modifications in Proteomes--Application to Human Mutations. PLoS One. 2015;10(12):e0144692. doi: 10.1371/journal.pone.0144692. PubMed
KSTAR: Crowl S, Jordan BT, Ahmed H, Ma CX, Naegle KM. KSTAR: An algorithm to predict patient-specific kinase activities from phosphoproteomic data. Nat Commun. 2022;13(1):4283. doi: 10.1038/s41467-022-32017-5. PubMed